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Roberts, G. A., B. Ozkan, I. Gachulincová, M. R. O'Dwyer, E. Hall-Ponsele, M. Saxena, P. J. Robinson and A. Soufi. Dissecting OCT4 defines the role of nucleosome binding in pluripotency. Nat Cell Biol 2021 Aug;23(8):834-845. PubMed PMID: 34354236.
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Trnka MJ, Pellarin R, Robinson PJ. Role of integrative structural biology in understanding transcriptional initiation. Methods. 2019 Mar 16. pii: S1046-2023(19)30013-1 PubMed PMID: 30890443.
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Hilton HG, McMurtrey CP, Han AS, Djaoud Z, Guethlein LA, Blokhuis JH, Pugh JL, Goyos A, Horowitz A, Buchli R, Jackson KW, Bardet W, Bushnell DA, Robinson PJ, Mendoza JL, Birnbaum ME, Nielsen M, Garcia KC, Hildebrand WH, Parham P. The Intergenic Recombinant HLA-B*46:01 Has a Distinctive Peptidome that Includes KIR2DL3 Ligands. Cell Rep. 2017 May 16;19(7):1394- 405. PubMed PMID: 28514659.
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Oberthuer D, Knoska J, Wiedorn MO, Beyerlein KR, Bushnell DA, Kovaleva EG, Heymann M, Gumprecht L, Kirian RA, Barty A, Mariani V, Tolstikova A, Adriano L, Awel S, Barthelmess M, Dorner K, Xavier PL, Yefanov O, James DR, Nelson G, Wang D, Calvey G, Chen Y, Schmidt A, Szczepek M, Frielingsdorf S, Lenz O, Snell E, Robinson PJ, et al. Double-flow focused liquid injector for efficient serial femtosecond crystallography. Scientific reports. 2017 Mar 16;7:44628. PubMed PMID: 28300169.
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Robinson PJ, Trnka MJ, Bushnell DA, Davis RE, Mattei PJ, Burlingame AL, Kornberg RD. Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex. Cell. 2016 Sep 08;166(6):1411-22 e16. PubMed PMID: 27610567.
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Robinson PJ, Trnka MJ, Pellarin R, Greenberg CH, Bushnell DA, Davis R, Burlingame AL, Sali A, Kornberg RD. Molecular architecture of the yeast Mediator complex. eLife. 2015 Sep 24;4. PubMed PMID: 26402457. Epub Sep 24.
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Lu J, Trnka MJ, Roh SH, Robinson PJ, Shiau C, Fujimori DG, Chiu W, Burlingame AL, Guan S. Improved Peak Detection and Deconvolution of Native Electrospray Mass Spectra from Large Protein Complexes. Journal of the American Society for Mass Spectrometry. 2015 Sep 1. PubMed PMID: 26323614. Epub Sep 1.
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Guan S, Trnka MJ, Bushnell DA, Robinson PJ, Gestwicki JE, Burlingame AL. Deconvolution Method for Specific and Nonspecific Binding of Ligand to Multiprotein Complex by Native Mass Spectrometry. Analytical chemistry. 2015 Aug 18;87(16):8541-6. PubMed PMID: 26189511.
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Trnka MJ, Baker PR, Robinson PJ, Burlingame AL, Chalkley RJ. Matching Cross-linked Peptide Spectra: Only as Good as the Worse Identification. Molecular & cellular proteomics : MCP. 2014 Feb;13(2):420-34. PubMed PMID: 24335475. PMCID: 3916644.
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Robinson PJ, Bushnell DA, Trnka MJ, Burlingame AL, Kornberg RD. Structure of the mediator head module bound to the carboxy-terminal domain of RNA polymerase II. Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17931-5. PubMed PMID: 23071300. PMCID: 3497735.
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Murakami K, Gibbons BJ, Davis RE, Nagai S, Liu X, Robinson PJ, et al. Tfb6, a previously unidentified subunit of the general transcription factor TFIIH, facilitates dissociation of Ssl2 helicase after transcription initiation. Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):4816-21. PubMed PMID: 22411836. PMCID: 3323989.
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Martino F, Kueng S, Robinson P, Tsai-Pflugfelder M, van Leeuwen F, Ziegler M, et al. Reconstitution of yeast silent chromatin: multiple contact sites and O-AADPR binding load SIR complexes onto nucleosomes in vitro. Mol Cell. 2009 Feb 13;33(3):323-34. PubMed PMID: 19217406.
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Graef T, Moesta AK, Norman PJ, Abi-Rached L, Vago L, Older Aguilar AM, Gleimer M, Hammond JA, Guethlein LA, Bushnell DA, Robinson PJ, Parham P. KIR2DS4 is a product of gene conversion with KIR3DL2 that introduced specificity for HLA-A*11 while diminishing avidity for HLA-C. J Exp Med. 2009 Oct 26;206(11):2557-72. PubMed PMID: 19858347. PMCID: 2768862. Epub 2009/10/28. eng.
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Robinson PJ, An W, Routh A, Martino F, Chapman L, Roeder RG, Rhodes D. 30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction. J Mol Biol. 2008 Sep 12;381(4):816- 25. PubMed PMID: 18653199.
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Robinson PJ, Rhodes D. Structure of the '30 nm' chromatin fibre: a key role for the linker histone. Curr Opin Struct Biol. 2006 Jun;16(3):336-43. PubMed PMID: 16714106.
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Robinson PJ, Fairall L, Huynh VA, Rhodes D. EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure. Proc Natl Acad Sci U S A. 2006 Apr 25;103(17):6506-11. PubMed PMID: 16617109.
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Huynh VA*, Robinson PJ*, Rhodes D. A method for the in vitro reconstitution of a defined "30 nm" chromatin fibre containing stoichiometric amounts of the linker histone. J Mol Biol. 2005 Feb 4;345(5):957-68. PubMed PMID: 15644197.
Roberts, G. A., B. Ozkan, I. Gachulincová, M. R. O'Dwyer, E. Hall-Ponsele, M. Saxena, P. J. Robinson and A. Soufi. Dissecting OCT4 defines the role of nucleosome binding in pluripotency. Nat Cell Biol 2021 Aug;23(8):834-845. PubMed PMID: 34354236.
Trnka MJ, Pellarin R, Robinson PJ. Role of integrative structural biology in understanding transcriptional initiation. Methods. 2019 Mar 16. pii: S1046-2023(19)30013-1 PubMed PMID: 30890443.
Hilton HG, McMurtrey CP, Han AS, Djaoud Z, Guethlein LA, Blokhuis JH, Pugh JL, Goyos A, Horowitz A, Buchli R, Jackson KW, Bardet W, Bushnell DA, Robinson PJ, Mendoza JL, Birnbaum ME, Nielsen M, Garcia KC, Hildebrand WH, Parham P. The Intergenic Recombinant HLA-B*46:01 Has a Distinctive Peptidome that Includes KIR2DL3 Ligands. Cell Rep. 2017 May 16;19(7):1394- 405. PubMed PMID: 28514659.
Oberthuer D, Knoska J, Wiedorn MO, Beyerlein KR, Bushnell DA, Kovaleva EG, Heymann M, Gumprecht L, Kirian RA, Barty A, Mariani V, Tolstikova A, Adriano L, Awel S, Barthelmess M, Dorner K, Xavier PL, Yefanov O, James DR, Nelson G, Wang D, Calvey G, Chen Y, Schmidt A, Szczepek M, Frielingsdorf S, Lenz O, Snell E, Robinson PJ, et al. Double-flow focused liquid injector for efficient serial femtosecond crystallography. Scientific reports. 2017 Mar 16;7:44628. PubMed PMID: 28300169.
Robinson PJ, Trnka MJ, Bushnell DA, Davis RE, Mattei PJ, Burlingame AL, Kornberg RD. Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex. Cell. 2016 Sep 08;166(6):1411-22 e16. PubMed PMID: 27610567.
Robinson PJ, Trnka MJ, Pellarin R, Greenberg CH, Bushnell DA, Davis R, Burlingame AL, Sali A, Kornberg RD. Molecular architecture of the yeast Mediator complex. eLife. 2015 Sep 24;4. PubMed PMID: 26402457. Epub Sep 24.
Lu J, Trnka MJ, Roh SH, Robinson PJ, Shiau C, Fujimori DG, Chiu W, Burlingame AL, Guan S. Improved Peak Detection and Deconvolution of Native Electrospray Mass Spectra from Large Protein Complexes. Journal of the American Society for Mass Spectrometry. 2015 Sep 1. PubMed PMID: 26323614. Epub Sep 1.
Guan S, Trnka MJ, Bushnell DA, Robinson PJ, Gestwicki JE, Burlingame AL. Deconvolution Method for Specific and Nonspecific Binding of Ligand to Multiprotein Complex by Native Mass Spectrometry. Analytical chemistry. 2015 Aug 18;87(16):8541-6. PubMed PMID: 26189511.
Trnka MJ, Baker PR, Robinson PJ, Burlingame AL, Chalkley RJ. Matching Cross-linked Peptide Spectra: Only as Good as the Worse Identification. Molecular & cellular proteomics : MCP. 2014 Feb;13(2):420-34. PubMed PMID: 24335475. PMCID: 3916644.
Robinson PJ, Bushnell DA, Trnka MJ, Burlingame AL, Kornberg RD. Structure of the mediator head module bound to the carboxy-terminal domain of RNA polymerase II. Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17931-5. PubMed PMID: 23071300. PMCID: 3497735.
Murakami K, Gibbons BJ, Davis RE, Nagai S, Liu X, Robinson PJ, et al. Tfb6, a previously unidentified subunit of the general transcription factor TFIIH, facilitates dissociation of Ssl2 helicase after transcription initiation. Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):4816-21. PubMed PMID: 22411836. PMCID: 3323989.
Martino F, Kueng S, Robinson P, Tsai-Pflugfelder M, van Leeuwen F, Ziegler M, et al. Reconstitution of yeast silent chromatin: multiple contact sites and O-AADPR binding load SIR complexes onto nucleosomes in vitro. Mol Cell. 2009 Feb 13;33(3):323-34. PubMed PMID: 19217406.
Graef T, Moesta AK, Norman PJ, Abi-Rached L, Vago L, Older Aguilar AM, Gleimer M, Hammond JA, Guethlein LA, Bushnell DA, Robinson PJ, Parham P. KIR2DS4 is a product of gene conversion with KIR3DL2 that introduced specificity for HLA-A*11 while diminishing avidity for HLA-C. J Exp Med. 2009 Oct 26;206(11):2557-72. PubMed PMID: 19858347. PMCID: 2768862. Epub 2009/10/28. eng.
Robinson PJ, An W, Routh A, Martino F, Chapman L, Roeder RG, Rhodes D. 30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction. J Mol Biol. 2008 Sep 12;381(4):816- 25. PubMed PMID: 18653199.
Robinson PJ, Rhodes D. Structure of the '30 nm' chromatin fibre: a key role for the linker histone. Curr Opin Struct Biol. 2006 Jun;16(3):336-43. PubMed PMID: 16714106.
Robinson PJ, Fairall L, Huynh VA, Rhodes D. EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure. Proc Natl Acad Sci U S A. 2006 Apr 25;103(17):6506-11. PubMed PMID: 16617109.
Huynh VA*, Robinson PJ*, Rhodes D. A method for the in vitro reconstitution of a defined "30 nm" chromatin fibre containing stoichiometric amounts of the linker histone. J Mol Biol. 2005 Feb 4;345(5):957-68. PubMed PMID: 15644197.